Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----MQEFIANGRVASIPDDAVGRTANGHVSFKFEFVCDSSQQDQ-EGKGLPAFFHVQVYGKQAEIMAQSLSKGLPILIKGEIIQRPYTNQQGQRRTFQYISPSQHDGITFLESKEATKKRKQGRFTSQAVTSPTLAYSEPVDADEPF
1V1Q Chain:A ((14-123))
PNSLMTNRLVLSGTVCRAPLRKV--SPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLS----------------------------------KMVLHAEQIELIDSVDKLA--
General information:
TITO was launched using:
RESULT:
Template:
1V1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42316 for 645 contacts (-65.6/contact) +
2D Compatibility (PS) -10754 + (NN) -264 + (LL) 2060
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -54624.0 ( -84.69 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_1V1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V1Q-query.scw
PDB file :
Tito_Scwrl_1V1Q.pdb
: