Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLIAIDMDGTLLNDEKKIPKENIQAIKEATQAGIKIVLCTGRPMSGILPYFNELGL-TKEEYIIMNNGCSTYSTKDWQLIDSATLTHDELIFLEEVVKEFPNVCLTLTAENTFYAVGEEVPE--IVAYDADLVFTKAKSTSLDALRNQEEIVFQAMYMGLDADVTAFQEAVEEALISKFSGVRSQDYIYEIMPQGVTKARGLKSLIAKLGLDINQVMAIGDAPNDIELLDLVPNSVAMGNASDEIKSRCKYITVDNNKAGVAKAIYDYALR
1RKQ Chain:A ((4-271))
AIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSREV-GSHFHALDRTTLYTANRDISYYTVHESFVATIPLV--FCEAEKMDPNTQ-FLKVMMIDEPAILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVLN
General information:
TITO was launched using:
RESULT:
Template:
1RKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189671 for 2343 contacts (-81.0/contact) +
2D Compatibility (PS) -28748 + (NN) -11103 + (LL) 272
1D Compatibility (HY) -17200 + (ID) 3900
Total energy: -250350.0 ( -106.85 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1RKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RKQ-query.scw
PDB file :
Tito_Scwrl_1RKQ.pdb
: