Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKNKIKKTLVDQILDKAKIEHDSLQLDALQ----GDLPNGIQKQDIFKTLALIGDKTGPIIGILPLTEHLSEKKLAKISGNKKVQMIPQKDLQKITGYIHGANNPIGIRQK----HNYPIFIDTIALEKQELIVSAGEIGRSIRINSEVLADFV-----NAKFADIKE
1VJF Chain:A ((13-175))
-----MKTRADLFAFFDAHGVDHKTLDHPPVFRVEEGLEIKAAMPGGHTKNLFLKDAKGQLWLISALGETTIDLKKLHHVIGSGRLSFGPQEMMLETLGVTPGSVTAFGL--INDTEKRVRFVLDKALADSDPVNFHPLKNDATTAVSQAGLRRFLAALGVEPMIVDFAA
General information:
TITO was launched using:
RESULT:
Template:
1VJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53507 for 1141 contacts (-46.9/contact) +
2D Compatibility (PS) -15533 + (NN) 307 + (LL) 448
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -73735.0 ( -64.62 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_1VJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJF-query.scw
PDB file :
Tito_Scwrl_1VJF.pdb
: