Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTLFLIMMERAGLIILLAYAFVHIPFIKQTLKQPELKKHQYILLILFSLFAIISNFTGVEIQSDLSIIPQTLNHIADQSSVANTRVLTIGVSGLIGGPIVGIIVGLLSVFVRYLQGGLAPHIYVISSLLIGLCSGLSGNYLRKNYNKIRVLDAMVVGFGMEILQMICILIFSVDFNQALRLVSFISMPMILSNTLGLGIFISIISSTQKLEEHAKAFQTHQVLELANLTLPYLRKGLTTESCQPVAEIIHKHMDVSAVSLTSQSAILAYVGDGADHHLPNTQILTKLAKRAIDTGKVSVATDKSEIECDHKNCPLSSAIVIPLHIHDVIVGTLKLYFSDAQHMTYVDRQLAEGLGNIFSTQLALGQAEEATRLLQDAEMKSLQAQVNPHFLFNALNTIYGLIRMDSEKARKLVQDFSKVIRANLQRAKQNLIPLHDELEQVNAYLALEEARFPNMVAFNLDNQTNSDDNLMIPP----FTLQVLIENSYKHAFKHVNKNNQLKVTIAR--NNDRLHIIVQDNGIGIPKEKLITLGKKTQIS-KQGSGTAIENLVRRLNIIYDGQASLKFESN-DSGTCAIVNIPIKN |
| 3SL2 Chain:A ((3-152)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IQIVRFMSLIIDRFEMTK---EQ--EFIRNLPD-RDLYVEIDQDKITQVLDNIISNALKYS----PEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDLGGTGLGLAIAKEMVQAHGG---DIWADSIEGKGTTITFTLPYKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SL2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -49780 for 942 contacts (-52.8/contact) +
2D Compatibility (PS) -14531 + (NN) -8626 + (LL) 37240
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -42197.0 ( -44.80 by residue)
QMean score : 0.535
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