Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTYQEALEWIHSKLAFGIKPGLERMRWMLEQLGNPQNNLSAIHVVGTNGKGSTTSYLQHIFTNSGYQVGTFTSPYIVDFRERISIDGQMIPESDFIKLVETVRPVVERLHLETNLEPATEFEVITVLMFYYFGNSCPVDIVIIEAGMGGYYDSTNMFKALAVTCPSIGLDHQEVLGRTYVDIAEQKVGVLKKGVPFVYANDRQDVEEVFQIKAKETHSQTYRLHND---FYIKE------EENYFNYIGPQANIDHIQLQMPGHHQVSNASIAITTSLLLRDKYPKLTLQTIKDGLE-MTKWVGRTELIF------PNVMIDGAHNNESVDALVQVIKK-YQQKNVHILFAAINTKPIESMLESLSSIA-PVSVTSFDYPKSINLDKYPK-A------YTRVSDWKKWLHDINLTSDKDFYVITGSLYFISQVRQELLLIKTTTT |
| 1J6U Chain:A ((101-437)) | -------------------------------------KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVF-------------LGGIMDSLE----------------------------H-------GNYE-K-GNGPVVYELDESE--EFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFAEDELTSHLG-D---------VTFGVKKGTYTLEMRSASRAEQKAM-VEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL-----GYDLAPVLEALEEFRGVHRRFSIAFHDPETNIYVIDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHR----GNFAKAL-QLADEVVVTEVYD----SGKMIWDSLKSLGKEAYFVEKLPELEKVI-SVSENTVFLFVGA----GDIIYSSRRFVERYQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1J6U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -9120 for 2346 contacts (-3.9/contact) +
2D Compatibility (PS) -29839 + (NN) 4478 + (LL) 9280
1D Compatibility (HY) 13200 + (ID) 1100
Total energy: -13101.0 ( -5.58 by residue)
QMean score : -0.005
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