Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNKGLIATLILLTILVVGELFYNKSEKHLNLSEKQVVKIGILQYV-PHDALDAIEKGVEDGLAQEGYKGKKVKLTVLN-AEADQSKIQAMSKQLVNHHNDILIGIATPS------AQGLAASTKDTPIIMGAVSDPLGAKLVTNMKKPTTNVTG-LSNVVPTKQTVQLIKDITPN-VKRIGILYAS-SEDNSVSQVTEFTKYAQKA--GLEVLKYSV--PSTNEIKTSMSVM---TKKVDAVFVPQDNTIASAFRTVIVAANQANIPVYSSVDTM-----VEQGS-IASVAQSQYGLGLETAKQAIKVLRGKPVKDVPVKVIDTGKPSLNLKAAKHLGIKIPKKIMKQAEITVKVDD |
| 1TJY Chain:A ((2-263)) | -----------------------------------SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGID-----VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQ--RGVKILTWDSDTKPE---------CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRN-NLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISVYVANALLKNMPMNVGDSLDIPGIGKVTVSPNSEQGYHYEAKGNGIVLLPERVIFN |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TJY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74427 for 2014 contacts (-37.0/contact) +
2D Compatibility (PS) -26086 + (NN) -13640 + (LL) 4384
1D Compatibility (HY) 0 + (ID) 1550
Total energy: -111319.0 ( -55.27 by residue)
QMean score : 0.492
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