Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKVQTGGKLYIA------GEYAILYPGQVAILKNIP-IYMTALATFADN----YSLYSDMFNYTASLQPDKQYSLIQETI-LLMEEWLINFGKNIKPIHLEITGKLERYGLKFGIGSSGSVVVLTIKAMAALYEIEMPSDLLFKLSAYVLLKRGDNGSMGDIACIAYEHLISYSAFDRRAVSKMIETKPLEQVLEAEWGYRITKIQASLEMDFLVGWTMQPS--ISKEMINIVKSTI-TQRFLDDTNYQVVQLLSAFKEGDKEAIKRCLEEISLLLFNLHP------SIYTDKLQKLKEASKG---LD-IVTKSSGSGGGDCGIAISFNKNDNQTLIKRWESAGIELLSKETLS |
| 2GS8 Chain:A ((9-303)) | -ITVTSYANIAIIKYWGKENQAK-MIPSTSSISLTLENMFTTTSVSFLPDTATSDQFYIN---GI-LQN--DEEHTKISAIIDQFRQ------PGQAFVKMETQNNMPTA---AGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASG---------SSSRSFFGPVAAWDKDSGA--IYKVE-----------------TD-LKMAMIMLVLNAAKKPISSREGMKLCRDTSTTFDQWVEQSAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDA--GPNVKVLCLEKD-LAQLAERLGKNYRIIVSKTKDL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GS8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148424 for 2134 contacts (-69.6/contact) +
2D Compatibility (PS) -28648 + (NN) -6813 + (LL) 2320
1D Compatibility (HY) -800 + (ID) 1800
Total energy: -184165.0 ( -86.30 by residue)
QMean score : 0.360
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