Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEKFGIGKAHSKIILMGEHSVVYGYPAIAIPLKNIEVTCLIEEAPQ-L--IAL-D--------M------TD---P----LSTAIFAALDYLGK-TSSKIAYHIESQVPERRGMGSSAAVAIAAIRAVFDYFDEDLEADLLECLVNRAEMIAHSNPSGLDAKTCLSENTIKFIRNI--GFS--TVPMHLNAYLVIADTGIH-GHTKEAVDKVKSSGEAVLPFLKELGYLAEASEDAIHKSDSKQLGSLMTKAHQSLKQLGVSSLEADHLVEVAISCGALGAKMSGGGLGGCIIALVKEKREAERLSQQLEREGAVNTWTEKV |
1KKH Chain:A ((2-311)) | -RGSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTS-TIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKI-ENKDEIFK---EIDKVIDEALKIKNKEDFGKLMTKNHELLKKLNISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVIILVNEEK-EKELLKELNKEDVRIFNCRMM |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155281 for 2376 contacts (-65.4/contact) +
2D Compatibility (PS) -30729 + (NN) -12551 + (LL) 584
1D Compatibility (HY) -17200 + (ID) 4150
Total energy: -219327.0 ( -92.31 by residue)
QMean score : 0.518
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