Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYSFEELLATMTLITAAEIEDKI-DSNQDFVLFIGRISCPFCHLFVPKIVEVADED--EFELFHLDSEDFDHWTANKEFRNKYDIPTVPGLMVVKNG-TI-KVKCDSKMTKEEIREFIG
2O8V Chain:B ((1-103))
-------SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP------GTAPKYGIRGIPTLLLFKNGEVAATKV-GALS-KGQLKEFLD
General information:
TITO was launched using:
RESULT:
Template:
2O8V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73380 for 711 contacts (-103.2/contact) +
2D Compatibility (PS) -10060 + (NN) 296 + (LL) 1276
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -87618.0 ( -123.23 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2O8V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2O8V-query.scw
PDB file :
Tito_Scwrl_2O8V.pdb
: