Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLRRPVLEDKEEILAMYKEFQKESSSVDGGFYE--PTMHFEDWLDHNLNMELGVGVPDNFVPYIQFVSFDNDNNAIGFLNLRLRLNDTLLEKGGHIGYSIRPRQRGKGYAKEQLKLGIEQAH-LKNINEILVTCHVDNDASKSVILANGGVLEDCLHQTERYWIT
3R9F Chain:A ((22-167))
ITLLYPALKYAEELYLLINQNKINFIKSMAWPAFVNNISDSVSFIEQSMIDNQ--------NEKALILFIKYKTKIAGVVSFNIIDHA---NKTAYIGYWLGANFQGKGIVTNAINKLIQEYGDSGVIKRFVIKCIVDNKKSNATALRCGFTLEGVLQKAEILNGV
General information:
TITO was launched using:
RESULT:
Template:
3R9F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29803 for 998 contacts (-29.9/contact) +
2D Compatibility (PS) -15725 + (NN) -9402 + (LL) 280
1D Compatibility (HY) -5600 + (ID) 1250
Total energy: -61500.0 ( -61.62 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_3R9F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9F-query.scw
PDB file :
Tito_Scwrl_3R9F.pdb
: