Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEESGNFGFDRLAELVKEYKVDKFVVGLPKNMNNTSGPRV-E-ASQAYG-DKITELFNLPVEYQDERLTTVQAERMLVEQADISRGKRKKVIDKLAAQLILQNYLDRMF
3LM2 Chain:A ((7-107))
-TVLAIDIGGSHVKIGLSTDGEER--KVESGKTMT--GPEMVAAVTAMAKDMTYDVIAMGYPGPVVHNKPLREPVNLGEGWVGYDYEGAFGRPVRIVNDALMQAIGSYNGGRMLFLGLGTGLGAAMIVENVAQPMEIAHLPY
General information:
TITO was launched using:
RESULT:
Template:
3LM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46662 for 703 contacts (-66.4/contact) +
2D Compatibility (PS) -10426 + (NN) -2545 + (LL) 548
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -64285.0 ( -91.44 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_3LM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LM2-query.scw
PDB file :
Tito_Scwrl_3LM2.pdb
: