Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYVIAAPEMLATTAADVDGIGSAIRAASASAAGPTTGLLAAAADEVSSAAAALFSEYARECQEVLKQAAAFHGEFTRALAAAGAAYAQAEASNTAAMSGTAGSSGALGSVGMLSGNPLTALMMGGTGEPILSDRVLA-IIDSAYIRPIFGP---NNPVAQYTPEQWWPFIGNLSLDQSIAQGVTLLNNGINAEL--QNGHDVVVFGYSQSAAVATNEIRALMALPPGQAPDPSRLAFTLIGNINNPNGGVLERYVGLYLPFLDMSFNGATPPDSPYQTYMYTGQYDGYAHNPQYPLNILSDLNAFMGIRWVHNAYPFTAAEVANAVPLPTSPGYTGNTHYYMFLTQDLPLLQPIRAIPFVGTPIAELIQPDLRVLVDLGYGYGYADVPTPASLFAPINPIAVASALATGTVQGPQAALVSIGLLPQSALPNTYPYLPSANPGLMFNFGQSSVTELSVLSGALGSVARLIPPIA |
| 3QPD Chain:A ((38-198)) | --------------------------------------------------------------------------------------------------------------------KPITFIFARASTEPGLLGISTGPAVC-NRLKLARSGDVACQGVGPRYTADLPSN--ALPEGTSQ-AAIAEAQGLFEQAVSKCPDTQIVAGGYSQGTAVMNGAIKRLSAD-----VQDKIKGVVLFGYTRNAQER--GQ-----IA--------NFP---KDKVKVYCAVGDLVCLGTL-------------IVAPPHFSYL------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3QPD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -37233 for 1304 contacts (-28.6/contact) +
2D Compatibility (PS) -16745 + (NN) -12176 + (LL) 18544
1D Compatibility (HY) 2000 + (ID) 800
Total energy: -46410.0 ( -35.59 by residue)
QMean score : 0.227
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