Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAALPAPEKLLRSDFPVLWPVGTRWADNDMFGHLNNAVYYQLFDTAINAWINTSTGVDPLAM--PVLGIVAESGCRYFSELRFPESLMVGLAVTRLGRSSVTYRLGVFKEPDDAGVITALGHWVHVYVDRTSRRPVPIPEAIRSLLSTACVSG
2GF6 Chain:A ((3-133))
------------ENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKEKVGIPYPIVNENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKD----GELTTEGYVIQIAINPKIWKSTEMPKEIMDKLS------
General information:
TITO was launched using:
RESULT:
Template:
2GF6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92588 for 922 contacts (-100.4/contact) +
2D Compatibility (PS) -14029 + (NN) -7664 + (LL) 1252
1D Compatibility (HY) -9200 + (ID) 1400
Total energy: -123629.0 ( -134.09 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_2GF6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GF6-query.scw
PDB file :
Tito_Scwrl_2GF6.pdb
: