Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSSIEIFPDSDILVAAAGKRLVGAIGAAVAARGQALIVLTGGGNGIALLRYLSAQAQQIEWSKVHLFWGDERYVPEDDDERNLKQARRALLNHVDIPSNQVHPMAASDGDFGGDLDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHSPAVLESTRMVVAVDDSPKPPPRRITLTLPAIQRSREVWLLVSGPGKADAVAAAIGGADPVSVPAAGAVGRQNTLWLLDRDAAAKLPS
4TM7 Chain:A ((15-256))
-DTVIERHADTAALVAAAGDRLVDAISSAIGERGQATIVLTGGGTGIGLLKRVRERSGEIDWSKVHIYWGDERFVPQDDDERNDKQAREALLDHIGIPPVNVHAMAASDGEFGDDLEAAAAGYAQLLSADFD--SSVPGFDVHLLGMGGEGHVNSLFPDTDAVRETERLVVGVSDSPKPPPRRITLTLPAVQNSREVWLVVSGEAKADAVAAAVGGADPVDIPAAGAVGRERTVWLVDEAAAAKL--
General information:
TITO was launched using:
RESULT:
Template:
4TM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139608 for 2160 contacts (-64.6/contact) +
2D Compatibility (PS) -27418 + (NN) -30296 + (LL) -272
1D Compatibility (HY) -22800 + (ID) 8000
Total energy: -228394.0 ( -105.74 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_4TM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TM7-query.scw
PDB file :
Tito_Scwrl_4TM7.pdb
: