Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKSLHQYAHVFSRLSLFGLAFAAAAQAQSQSLTVISFGGATKAAQEQAYFKPFERSGGGQVVAGEYNGEMAKVKAMVDVGKVSWDVVEVESPELLRGCDEGLFERLDPARFGDPAQFVPGT------F--SECGVATYVWSMVMAYDSTKLARAPQSWADFWNVR-EFP--GKRGLRK--GAKYTLEVALLADGVKA-E--DL-----YKVLATPEGVSRAFAKLDQLKPNI--QWWEAGAQPPQWLAAGDVVMSAAYNGRIAAAQKEGVKLAIV-WP---G----SLYDPEYWAVVKGTPNKALAEKFIA-FASQPQTQKVFSEQIPY-GPVHKGTLALLPKTVQEALPTAPANLEGARAVDAEFWVDHGEELEQRFNAWAAR |
| 3WOA Chain:A ((51-356)) | --------------------------KIEEGKLVIWINGDK-GYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPDK-AFQD-KLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNA-GAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WOA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74392 for 2143 contacts (-34.7/contact) +
2D Compatibility (PS) -29376 + (NN) -7357 + (LL) 3176
1D Compatibility (HY) -5200 + (ID) 2200
Total energy: -115349.0 ( -53.83 by residue)
QMean score : 0.425
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