Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
4LPK Chain:B ((2-167))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4LPK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100592 for 1339 contacts (-75.1/contact) +
2D Compatibility (PS) -18716 + (NN) -10638 + (LL) 1972
1D Compatibility (HY) -22800 + (ID) 8050
Total energy: -158824.0 ( -118.61 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_4LPK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LPK-query.scw
PDB file :
Tito_Scwrl_4LPK.pdb
: