Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATRSPGVVISDDEPGYDLDLFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMGGH-------HIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHVCVISETGKAKYKA
1TC1 Chain:A ((4-187))
---------------------------YE-FAEKILFTEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDF------NVPVRMEFICVSSY--------VRMLLDT-RHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYGLDYDDTYRELRDIVVLRPE-------
General information:
TITO was launched using:
RESULT:
Template:
1TC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -167402 for 1322 contacts (-126.6/contact) +
2D Compatibility (PS) -18336 + (NN) -3577 + (LL) 1032
1D Compatibility (HY) -18800 + (ID) 2700
Total energy: -209783.0 ( -158.69 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_1TC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TC1-query.scw
PDB file :
Tito_Scwrl_1TC1.pdb
: