Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
3KAC Chain:B ((9-123))
------------------------------------------------QGEPARVRCSHLLVKHSQSRRPSSWRQEQITRTQEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE
General information:
TITO was launched using:
RESULT:
Template:
3KAC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29431 for 874 contacts (-33.7/contact) +
2D Compatibility (PS) -12327 + (NN) -6984 + (LL) 1056
1D Compatibility (HY) -12000 + (ID) 5650
Total energy: -65336.0 ( -74.76 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3KAC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KAC-query.scw
PDB file :
Tito_Scwrl_3KAC.pdb
: