Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADVYPANDSTASQDVANRFARKGALRQKNVHEVKDHKFIARFFKQPTFCSHCTDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINDPSLCGMDHTEKRGRIYLKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSNLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKAHNQEEGEYYNVPIPEGDEEGNMELRQKFEKAKLGPVGNKVISPSEDRKQPSNNLDRVKLTDFNFLMVLGKGSFGKVMLADRKGT-EELYAIKILKKDVVIQDDDVECTMVEKRVLALLDKP--PFLTQLHSCFQT-VDRLYFVMEYVNGGDLMYHIQQV-GKFKEPQAVFYAAEISIGLFFLH-KRGIIYRDLKLNNVML--NSEGHIKIADFGMCKEHMMDGVTTR--TFCGTPDYIAPEIIA---YQPYGKSVDWWAYGVLLYEMLAG-QPPFDGEDEDELFQSIMEHNVSYP-KSLSKEAVSICKGLMTKQPAKRLGCGPEGERDVREHAFFRRID---WEKLENREIQPPFKPKVCGKGAENFDKFFTRGQPVLTPPDQLVIANIDQSDFEGFSYVNPQFVHPILQSAV |
| 1CDK Chain:A ((8-350)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KGSEQESVKEFLAKAKEDFLKKWENPAQNTA------H-----------------------------------------------------------------LDQFERIKTLGT--------------------------------G--SFGRVMLVKHKETG-NHFAMKILDKQKVVKLKQIEHTLNEKRILQAV---NFPFLVKLEYSFKDN-SNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHS-LDLIYRDLKPENLLIDQ--QGYIQVTDFGFAKRV-K--G--RTWTLCGTPEYLAPEIILSKGY---NKAVDWWALGVLIYEMAAGY-PPFFADQPIQIYEKIVSGKVRFPS-HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSI------NEKCGKEFSEF---------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -137225 for 2596 contacts (-52.9/contact) +
2D Compatibility (PS) -34956 + (NN) -14566 + (LL) 17488
1D Compatibility (HY) -24000 + (ID) 5850
Total energy: -199109.0 ( -76.70 by residue)
QMean score : 0.207
|
|
|