Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLSE-----DKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
4E9A Chain:A ((1-163))
-ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINPKFIETGGSMM-YKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKEL--------
General information:
TITO was launched using:
RESULT:
Template:
4E9A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66450 for 1215 contacts (-54.7/contact) +
2D Compatibility (PS) -16837 + (NN) -3055 + (LL) 1144
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -105448.0 ( -86.79 by residue)
QMean score : 0.600
(partial model without unconserved sides chains):
PDB file :
Tito_4E9A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4E9A-query.scw
PDB file :
Tito_Scwrl_4E9A.pdb
: