Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPPSISAFQAAYIGIEVLIALVS---VPGNVLVIWAVKVNQALRDATFCFIVSLAVADVAVGALVIPL-AILINIGPQTY--FHTCLMVACPVLILTQSSILALLAIAVDRYLRVKIPLRYKMVVTPRRAAVAIAGCWILSFVVGLTP--MFGWNNLSAVERAWAANGSMGEPVIKCEFEKVISMEYMV---YFNFFVWVLPPLLLMVLIYLEVFYLIRKQLNKKVSASSGDPQK-YYGKELKIAKSLALILFLFALSWLPLHILNCITLFCPSCHKPSILTYIAIFLTHGNSAMNPIVYAFRIQKFRVTFLKIWNDHFRCQPAPPIDEDLPEERPDD
2Y04 Chain:B ((13-298))-------------GMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVT-ASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMHWWRDEDP-----QALKCYQDPGC-CDF--VTNRAYAIASSIISFYI----PLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA----------------------


General information:
TITO was launched using:
RESULT:

Template: 2Y04.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -247430 for 1958 contacts (-126.4/contact) +
2D Compatibility (PS) -28740 + (NN) -16300 + (LL) 3200
1D Compatibility (HY) -31200 + (ID) 5150
Total energy: -325620.0 ( -166.30 by residue)
QMean score : 0.258

(partial model without unconserved sides chains):
PDB file : Tito_2Y04.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2Y04-query.scw
PDB file : Tito_Scwrl_2Y04.pdb: