Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IDCGHVDSLVRPCLSYVQG---GPG-------------------PSGQCCDGVKNLHNQARSQSDRQSACNCLRGIARGIH--N-L-------NEDNARGTPLKCGVNLPYTISLNIDCSRV
1PSY Chain:A ((25-118))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRC-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19350 for 463 contacts (-41.8/contact) +
2D Compatibility (PS) -6080 + (NN) 869 + (LL) 1288
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -28023.0 ( -60.52 by residue)
QMean score : 0.242
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: