Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VSCGDAVSALAPCGPFLLGG-----AAR-------PGDRCCGGARALRGMAGTAEARRALCRCLEQSGPSF--GV----LPDRARRLPALCKLGLAIPVGAATDCSKIS
1S6D Chain:A ((19-97))
-------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDE--------KCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35183 for 378 contacts (-93.1/contact) +
2D Compatibility (PS) -6191 + (NN) 1679 + (LL) 1968
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -42777.0 ( -113.17 by residue)
QMean score : 0.247
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: