Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VVVARAALSCSTVYNTLLPCLPYVQS---GG-------------AVPAACCGGIRSVVAAARTTADRRAACTCLKNVAAGAA--GGP-------YISRAAGLPGRCGVSVPFKISPNVNCNAVN
1SM7 Chain:A ((13-101))
--------------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54145 for 427 contacts (-126.8/contact) +
2D Compatibility (PS) -6617 + (NN) -1206 + (LL) 3088
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -63230.0 ( -148.08 by residue)
QMean score : 0.230
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: