Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GTSDLCGLAETAFGECTAYVAGG---E--PAV------------SRRCCRALGDIRDLAATAAERRAVCACILSEMLAAG--DGRVD-----SGRAAGLPAACNVRVGF-IPTSPNFNCFRVR
1W2Q Chain:A ((23-121))
----------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME----N--TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37033 for 431 contacts (-85.9/contact) +
2D Compatibility (PS) -7541 + (NN) -3030 + (LL) 1488
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -49566.0 ( -115.00 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: