Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATACDATQLTPC--AGAIIIGRSP-----SAACCSRLKEQQPCLCTYARD-PNLQRY-VNSPNGKKAMAACKV-PVPSC----------------------------
1SYR Chain:A ((9-111))
----MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYA
General information:
TITO was launched using:
RESULT:
Template:
1SYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15151 for 356 contacts (-42.6/contact) +
2D Compatibility (PS) -7197 + (NN) -2177 + (LL) 396
1D Compatibility (HY) -4000 + (ID) 450
Total energy: -28579.0 ( -80.28 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_1SYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SYR-query.scw
PDB file :
Tito_Scwrl_1SYR.pdb
: