Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------AVDTGAAAGVPSCASK--LVPCGGYLNATAAPPP---------------------ASCCGPLREAAANETACLCAILTN--KAALQAFGVA-------PEQGLLLAKRCGVTTDASACAKSASSSATAAAAAAV
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV---RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR-----CMRQTRTN---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31302 for 589 contacts (-53.1/contact) +
2D Compatibility (PS) -8587 + (NN) 343 + (LL) 1696
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -42100.0 ( -71.48 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: