Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TITCGQVVSTLTPCISYIRGD--S-T-------------------LPQTCCSGVKKLNALASTSPDRQGACSCLKNLASHIP--N-L-------NPARAAGLPGNCGVSVPYPISTSTDCSKVR
1PSY Chain:A ((25-119))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCM-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30122 for 485 contacts (-62.1/contact) +
2D Compatibility (PS) -6374 + (NN) -185 + (LL) 1448
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -40933.0 ( -84.40 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: