Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCQQVTVAVTPCIGYART---G-G---T---------------MPPDCCNGVRNLNSAAKNTPDRQQACICLKQMS-SIP---GI-------NMSIVSEIPAKCNVNIGYPIAMSTDCSKVK
1PSY Chain:A ((25-117))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28480 for 429 contacts (-66.4/contact) +
2D Compatibility (PS) -5702 + (NN) 2121 + (LL) 1852
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -32859.0 ( -76.59 by residue)
QMean score : 0.233
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: