Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNCGQVNKALSSCVPFLTGF----DT--------TPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYP-N----IREDAASSLPYKCGVVINVPISKTTNCHEIN
1S6D Chain:A ((19-97))
-------EMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD--------EKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM---------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44438 for 401 contacts (-110.8/contact) +
2D Compatibility (PS) -6111 + (NN) 583 + (LL) 1508
1D Compatibility (HY) -3600 + (ID) 550
Total energy: -52608.0 ( -131.19 by residue)
QMean score : 0.189
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: