Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AIGCGTVVSYLNSCFPYVTG----TG---A----L------------GGCCKGIKDLYAAAQTTADRQSVCDCLKDLAASTT------G----VDLGKAAGLPSQCGLNIPYKIIPSTDCSKVQ
1PSY Chain:A ((25-119))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCM-------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29944 for 452 contacts (-66.2/contact) +
2D Compatibility (PS) -5899 + (NN) 1417 + (LL) 2164
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -36212.0 ( -80.12 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: