Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCSSVTKQLTPCLSYLTS---GG---AP------------TAACCGGVKSLNGMASMSTPDRQATCNCLKAASKGI-------N-----LQNAVSLPAKCGVKIGYSISPNTDCSKVR
1W2Q Chain:A ((23-114))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMEN-------TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25810 for 375 contacts (-68.8/contact) +
2D Compatibility (PS) -6356 + (NN) -2405 + (LL) 1428
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -36543.0 ( -97.45 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: