Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGATPPDTVA---LRLAPCASAAED----PGS---------APSGSCCSAVHAIGKQSPRCLCAVMLSNTAR------SA-G----IKAEVAITIPKRCNLADRPVGYKCGDYTLP
2LVF Chain:A ((8-101))
--------CREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31376 for 382 contacts (-82.1/contact) +
2D Compatibility (PS) -6900 + (NN) -643 + (LL) 76
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -41943.0 ( -109.80 by residue)
QMean score : 0.256
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: