Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---QDPITPGPTIADCSPRLVALMPCAPFVQGTAQMPA---QSCCDNLNQLYTLQPGCLCLLL---------NDTTLSDFPINRTRAL--QLPVLCKLQANASACSEID--------------
1HSS Chain:A ((5-124))
MCYPGQAFQVPALPACRPLLRLQC-------NGSQVPEAVLRDCCQQLAHI---SEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVVD--ASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55552 for 476 contacts (-116.7/contact) +
2D Compatibility (PS) -8546 + (NN) -5946 + (LL) 884
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -73110.0 ( -153.59 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: