Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YGPCGKHNIEKEAEKLAPCTKAAQDL------KAP---VSKSCCTVMEKKLKNPGCLCAIMLSH---TAKN-----------A-G----V-K-PEVAVTIPKRCNIPVRPVGHKCGAFPLV
1B1U Chain:A ((16-110))
--------------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI--PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG----------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28615 for 405 contacts (-70.7/contact) +
2D Compatibility (PS) -6831 + (NN) -4691 + (LL) 980
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -41307.0 ( -101.99 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: