Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--SACSSTFFSALVQLIP------CRAAVAPFS------PIPPNEACCNAIKALGQPCLCVLVNGPPISGVDRNMALQLPEKCTANFEPCDVMK
1D8J Chain:A ((1-81))
ALSGSSGYKFGVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTE---ALVNNPKIEVIDGKYAFKPKYNVR----------
General information:
TITO was launched using:
RESULT:
Template:
1D8J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36082 for 352 contacts (-102.5/contact) +
2D Compatibility (PS) -6932 + (NN) -4176 + (LL) 892
1D Compatibility (HY) -1600 + (ID) 700
Total energy: -48598.0 ( -138.06 by residue)
QMean score : 0.331
(partial model without unconserved sides chains):
PDB file :
Tito_1D8J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8J-query.scw
PDB file :
Tito_Scwrl_1D8J.pdb
: