Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------------AVTCGQVGSSIAPCVAYVTGKAAAVSPGC-CSGIRGLNNMAR-----------TTADRQAACRCLKSMAGSI-----KALNMGKVAGVPGKCGVNVGFPISMSTDCNKVT--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA------GSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31275 for 427 contacts (-73.2/contact) +
2D Compatibility (PS) -8698 + (NN) -1098 + (LL) -244
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -46015.0 ( -107.76 by residue)
QMean score : 0.246
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: