Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AELSPSQCKQERQL-GINSCKAVVFGQ--------PA---------------SPACCQRIRVSHWECVCPAFNPKLAALI------------DINKAIKILQTCGRKVPHHFKCGSLYFP
1PSY Chain:A ((15-116))
----SQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23218 for 480 contacts (-48.4/contact) +
2D Compatibility (PS) -6915 + (NN) -4015 + (LL) 912
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -36536.0 ( -76.12 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: