Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSCPAVQQTLTTCLLYATNP---HG---P---------------PPEPCCNGIKTLHGQSQTPLDRRDVCGCLKSMMTNL---K-L-------NLPAVATLPKECGVDLGYVISPDMDCSKT
1PSY Chain:A ((25-120))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51778 for 484 contacts (-107.0/contact) +
2D Compatibility (PS) -6348 + (NN) -1392 + (LL) 652
1D Compatibility (HY) -2800 + (ID) 650
Total energy: -62316.0 ( -128.75 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: