Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
KKDLPFCNVELLPCVLPFKVR------------GHGSK--LPNGCCEKMKKSTSCMCRFLMAKERDLNAAAHRIF-WFCKISVPNCPKI
1JJU Chain:A ((274-351))
------AAPQVLA-VAPARLKIGEETQLRVAGTGLGSDLTLPEGVAGSVESAGNGVTVLKLTATGTPGPVSLELGGQKVDLVAYD----
General information:
TITO was launched using:
RESULT:
Template:
1JJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30459 for 367 contacts (-83.0/contact) +
2D Compatibility (PS) -6712 + (NN) 429 + (LL) 460
1D Compatibility (HY) 0 + (ID) 450
Total energy: -36732.0 ( -100.09 by residue)
QMean score : 0.038
(partial model without unconserved sides chains):
PDB file :
Tito_1JJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJU-query.scw
PDB file :
Tito_Scwrl_1JJU.pdb
: