Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TVENAADCAAVGTLISSCTEFVNYG---Y-----PDPIP-----------GSSCCDAMTVIGTYSDSSEKRKWLCNCFMDLIN-VY--N-S-------NATAISTLSGFCGVVLGFTIDPNTDCNFIQ
1PSY Chain:A ((25-116))
------------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV----------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56684 for 412 contacts (-137.6/contact) +
2D Compatibility (PS) -6247 + (NN) -1274 + (LL) 1456
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -65699.0 ( -159.46 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: