Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEVFLNNATKKIEGE-YHQSKETNAPVVLILHHHPQYGGSMDSKMIHSIYTSFIDNNFSALKINFRGVGKSTGTFDKGIGELTDAAIAIDWLQEHNPSNVPIWIVGFSFGAWVAMQLTMRRPEIVGFIALSLPATKYDFSFLSPCPVPGLIIQSSNDTISEESDVTELANRLINSVKSDHMEYHIIGDTNHFLRDKEEEVTQIIDNYVKLRLNSAAISSQMVKKEIRIKEYA
3TRD Chain:A ((7-206))
-EDFLIQGPVGQLEVMITRPKGIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGRYDNGVGEVEDLKAVLRWVEHHW-SQDDIWLAGFSFGAYISAKVAYDQ-KVAQLISVAPPVFYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQ-IS----SPVEFVVMSGASHFFHGR----LIELRELLVRNLA-------------------
General information:
TITO was launched using:
RESULT:
Template:
3TRD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135220 for 1760 contacts (-76.8/contact) +
2D Compatibility (PS) -21915 + (NN) -10872 + (LL) 2740
1D Compatibility (HY) -14800 + (ID) 2450
Total energy: -182517.0 ( -103.70 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3TRD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TRD-query.scw
PDB file :
Tito_Scwrl_3TRD.pdb
: