Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVTEKNGEIWLHNMHIAEYKAANKKKHKPKRERKLLLHKKEINKLISQIKTAGVTIVP------LSIYFNDKGLVKTRIAIVKGKKLYDKRATIKQREWNRAKSRLSKNNL
1LQP Chain:A ((1-134))
-----MLTGLNHLTLAVADLPASIAFYRDLL-GFRLEARWDQGAYLELGSLWLCLSR------EPQYGGPAADYTHYAFGIAAADFARFAAQLRAHGVREWKQNRSEGDSFYFLDPD--GHRLEAHVGD-LRSRLAACRQAPYAGMRFA------
General information:
TITO was launched using:
RESULT:
Template:
1LQP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12481 for 809 contacts (-15.4/contact) +
2D Compatibility (PS) -13342 + (NN) -164 + (LL) 2372
1D Compatibility (HY) -5600 + (ID) 850
Total energy: -30065.0 ( -37.16 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_1LQP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LQP-query.scw
PDB file :
Tito_Scwrl_1LQP.pdb
: