Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYSAVIVKPKRNVFAVLDIGTTKIICLIVKVSGNFNYKITGTGYKIAEGINGGLITDIKYASYSISSTIGLAEQVSEETIDQIYVNIAGCGILSFNVHNEIIAANHEISDRDIKRVIFQTFEKYIEENVIIHNIPLRYHLDDMTDIREVSGLYGKRLSADVNVVTASRPALTNIENCITNNSGISMAGCIASAYSAGFACLSED---EKELGTAIVDIGGGCTAIGIFKRSKLIYA--NSIPIGGVHITRDIAYGLCTSIEHAERIKILYGSTVVTSIDEN-----EYITV--QSNENDEQARIPKSEL---VDIIRPR------IEEILELVKEQFRK-----QKDPINKVVITGGTSRLASMKEIASYIFNKQVRIGCPESYG-GLDGEYNKNPVFSAAIGSIKLIVDTFYKNNPDMLGQDGKISKLYHWVKSKVTV |
3DWL Chain:A ((135-397)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------PPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLR--LKTAERIKEECCYVCPDIVKEFSRFDR--LKYAS--------IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDER---GVDVNV--ISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DWL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80224 for 1442 contacts (-55.6/contact) +
2D Compatibility (PS) -20699 + (NN) -653 + (LL) 12808
1D Compatibility (HY) -8000 + (ID) 1700
Total energy: -98468.0 ( -68.29 by residue)
QMean score : 0.254
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