Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDLKTMM-LNFGPQHPAAHGVLRLVLEMDGEIIERADPHIGLLHRGTEKLIEHKTYLQALPYFDRL---DYVSPMSQEHAYSLCVEKLLQCEVPIRAKYLRVLFCELTRILNHLLNISSQALDVGAMTPLLWLFEEREKILEFYERASGARFHAAYIRPGGVAADVPEGLIEDIAKFIEQFPQYIDDVDELLTENRIWKQRTV----GISEISIKQALDWGFSGPMLRAAGLAWDLRKSQPYEIYDQLDFDIPVGQNGDCYDRYLVRMEEIRQSVSLVKQCIEKIPEGPVKTEDRKISPPPRTEMKRSMEALI----------HHFKLYSEGYHVPEG-EAYAAVEAPKGEFGVYIVS--------DGTNRPYRCRIRAPGFAHLQALDFMAKGHMLADVAAIIGSLDIVFGEIDR-- |
| 4K6N Chain:A ((32-383)) | -PNFEVLATFRYDPGFA-------RQSASKKEIFETPDPRLGLRDEDIRQQIINEDYSSYLRVREVNSGGDLLENIQHPDAWKHDCKTI----VCQRVEDMLQVIYER-----------------------FFLLDEQYQRIRIALSYFKIDFSTS-------LNDLLKLLVENLINCKEGNSEYHEKIQKMINERQCYKMRVLVSKTGDIRIEAIPM-------PMEPILKLTTDYDSVSTYFIKTMLNGFLIDST----INWDVVVSSEPLNASAFTSF----------KTTSRDHYARARVRMQTAINNLRGSEPTSSVSQCEILFSNKSGLLMEGSITNVAVIQKDPNGSKKYVTPRLATGCLCGTMRHYLLRL---GLIEEGDID-IGSLTVGNEVLLFNGVMGCIKGTVKTKY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K6N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -87486 for 2485 contacts (-35.2/contact) +
2D Compatibility (PS) -33417 + (NN) 8113 + (LL) 3592
1D Compatibility (HY) -12400 + (ID) 2950
Total energy: -124548.0 ( -50.12 by residue)
QMean score : 0.226
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