Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVDYEEIFLNKIKDIKEEGRYREFTHFASLPGRLPYIMDCERNREVIVWCSNNYLGMSQNESVVAAIQNS----SVGAGGTRNISGTTKEVVELEQSLACLHNKEAALTFACGYLANQTTLSTLSSVIPDVVIFSDEKNHSSMIEGIKSGKRPKHIFKHNNVDHLEQLLKSVDRKTPKIIAFE--SIYSMDGDIAPLREICNLADQYNAITYLDEVHAIGMYGLRGGGIAEREGLMDRVTVIQGTLSKAFGVM-GGYIASSKSLVDVIRSSAPGFIFTTAMSPVLAAAAKASVEHLKSSNVEREKQRQVVEKVKNSLSSVGINFIPTETHIIPIIIGDPELSKRASKLLFDEYGVYVQHINYPTVPRGTERFRITPTPYHTDEMIEHLTESLIKVFVKLSVSVACLC |
| 1FC4 Chain:A ((12-399)) | -------LTNDLETARAEGLFKEER-IITSAQQA--DITVADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLG--AEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGDAVVAQKFARE-LQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLGVIA---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1FC4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189018 for 3379 contacts (-55.9/contact) +
2D Compatibility (PS) -42157 + (NN) -22489 + (LL) 1760
1D Compatibility (HY) -21200 + (ID) 5650
Total energy: -278754.0 ( -82.50 by residue)
QMean score : 0.543
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