Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFITFEGIDGSGKTIQSELLANYFKQIHGENNMVLTREPGGTDFAEKVRGILLK-DSIDPVSELLLLISMRYEHVKKVILPALKKGKIVICDRFIDSTIAYQGYGLGVDLELIRDLHKL-VKIKYPDTTFILDIDVQIGLSR--AMDKNKYEEMNISFYNKVRKGFQEIAINEPDRCSIITEIEAKDNNQVHVEIVNKVTATKPVLLRK
4QGG Chain:B ((4-177))
-FITFEGPEGSGKTT---VINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII-------DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI-----
General information:
TITO was launched using:
RESULT:
Template:
4QGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86763 for 1206 contacts (-71.9/contact) +
2D Compatibility (PS) -18165 + (NN) -15060 + (LL) 1308
1D Compatibility (HY) -12800 + (ID) 3300
Total energy: -134780.0 ( -111.76 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_4QGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QGG-query.scw
PDB file :
Tito_Scwrl_4QGG.pdb
: