Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKVGVIGCSGRMGKRILNELITNTQVEIAGAVARLGSKYIGSDIGSAVYHSSNLGIKVTSSISDVFESSDVVIDFTTKECMLACLKAAMKFKTPLVSGTTGIESI---NLKKYAAKIPILWSANMSVGVNVLLKLVKKAAEFLDNEYDVEIWEMHHNLKKDSPSGTAMEFGKAIANALKVDFQPYQHSHNSSNIREKGKIGFAVSRGGGVVGDHSVMFINSDERIELNHKAIDRTTFARGAVRAAIWLYENKRETPGLYSMQDVI
3QY9 Chain:A ((3-243))
-SMKILLIG-YGAMNQRVARLAEE-KGHEIVGVIENTPK--T--------------PYQQYQHIAD-VKGADVAIDFSNPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLD-DFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDR-HELNEKRQPQDIGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNK---PNGFYTFDNL-
General information:
TITO was launched using:
RESULT:
Template:
3QY9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157324 for 1810 contacts (-86.9/contact) +
2D Compatibility (PS) -25243 + (NN) -9755 + (LL) 1424
1D Compatibility (HY) -13200 + (ID) 3900
Total energy: -207998.0 ( -114.92 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_3QY9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QY9-query.scw
PDB file :
Tito_Scwrl_3QY9.pdb
: