Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNTHASVKNLSLWYG-----SKQALFDINLDICKKKVTAFIGPSGCGKSTFLRCFNRMNDYVPGCKVAGKLDIDGLGDIYSRNVDVVLLRAKVGMVFQKPNP--FPKSIYDNVAYGPKLHGMVKNKQKLDEIVENSLTKVGLWEELKDRLQDSALDLSGGQQQRLCISRAIAVKPTILLMDEPCSALDPMATNAIENLIQEL--KLRFTIIMVTHSMKQAKKLSDSIIFFCNGKIVESGSVQEIFENARSPLTKEYILDH
4MKI Chain:A ((9-239))
-------VENVSFIYNEGTPYATVALKDINFSIDDEEFVGIIGHTGSGKSTLIQ---QLNGLLKPSK--GKIYINGI-DITDKKVSLKDIRKQVGLVFQYPEYQLFEETVFKDIAFGPSNLGL--SEEEVKERVYEAMEIVGISKELADK---SPFELSGGQKRRVAIAGILAMRPKILILDEPTAGLDPKGKQEILNKIKEIHDKYKMITILVSHNMEDIARIADKIIVMNRGKIELIGTPREVFREAERLEKIGLSVPQ
General information:
TITO was launched using:
RESULT:
Template:
4MKI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127880 for 1744 contacts (-73.3/contact) +
2D Compatibility (PS) -24439 + (NN) -10371 + (LL) 1008
1D Compatibility (HY) -20000 + (ID) 4100
Total energy: -185782.0 ( -106.53 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4MKI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKI-query.scw
PDB file :
Tito_Scwrl_4MKI.pdb
: