Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEAYMLASNST---ETILVADQNIYNSSASNNPALNTQDLSGSTPDKDKYVTLNSKEEWDKFFKLQNNPSTNITNKVRTKPHVRKNSNGMYRYTAEENKYNGKEIIGKVAEQIKEEISQKIKSDTMKLVKLKESKNEDNSVKPAIRIVLNDNVKEINMADLLSGSVCKEYNVKAI---------TFCFPDKSNTRGIRCRIDEHGTRIYEVANGSYEMDLRWYCEGKECKIKILMKDDGSIRLIED---------NGITEEQLKAHKEIRV--------GRQYEAKSLHEALAL--------------------------QLPQLQQKCSETTEIL-SRLADVSTSQAQQVLSAQVSK--------------------- |
| 3RFY Chain:A ((78-433)) | -GGILLVANPVIPDVSVLISGPPIKDPEALLRYALP----------------IDNKAIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMI-EKLEAGMQDMLKIVEDRKRDAVAPKQKEILKYVGGIEEDMVDGFPYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGME-----IQRSDGFVVQTGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLENLANPSY |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RFY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 43264 for 1954 contacts (22.1/contact) +
2D Compatibility (PS) -27577 + (NN) 10040 + (LL) 1040
1D Compatibility (HY) -5600 + (ID) 2650
Total energy: 18517.0 ( 9.48 by residue)
QMean score : 0.186
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